Scaffold Ga0069718_10159778

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_10159778
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4413
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009888	Metagenome / Metatranscriptome	311	N
F012219	Metagenome / Metatranscriptome	282	Y
F050378	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_101597782	F009888	GAGG	MAVIFDLTEDPQQVVQVSAWVGDWHSYVVRLVDELGSPVDITTGTLGITYTNIATGSAYTFASGSVTLTKQYSAQGILSILNPAAYGTAANIRVTVSFTVGTDVRRFGPLEIEVLAP*
Ga0069718_101597784	F012219	AGGTGG	MNLQNFRIEKEPAPSTDWRVYGDIEDDAGNILGTFGQDGTSVNVWWVTQDEQFQYGIVQQFAVIMAQQIVSGDAE*
Ga0069718_101597786	F050378	GGAG	MTAEMWIQVGIQVMTTVISIGTAWVAIQVRLTRLETQVAHIVNTLDGQQQEVRRIEQRLGKLENKVSALEAVIQR*