Scaffold Ga0069718_10108519

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_10108519
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1696
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F042864	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_101085191	F000957	AGGGGG	MSAFQHLDGMTALLSELYEVNERVLTGDIMSAKAAIASQRMPKLIRHYHEALSEDGAQAIYLEPFVAAGGWVGLTYSYTLPDGFTVSGS
Ga0069718_101085194	F003714	N/A	MPNANHPFTDHLTFAGRPIPLKRPMAVYAANRLQAILPQIAALNAAGKTQADAAAALETTVCTLRMWLDITGTTWVNLKRRGPYNIKK*
Ga0069718_101085195	F042864	N/A	MSTPTKPKATLVSDKAMVELLKRKVTSFRETASLKDKDGYVRGIGSYALYGVDHTRGQIVVLASEPTAGDFNQYVTAKAKAEVCARYDQVVEYRDAGSHSSPKVTILCWTLN*