Scaffold Ga0069718_10003120

Overview

Basic Information

• Taxon OID: 3300004481
• Scaffold ID: Ga0069718_10003120
• Source Dataset Name: Combined Assembly of Gp0112041, Gp0112042, Gp0112043
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The National High-throughput DNA Sequencing Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3098
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location

• Location Name: Copenhagen, Denmark
• Coordinates
  • Lat. (^o): 55.685937
  • Long. (^o): 12.574205

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049633	Metagenome / Metatranscriptome	146	Y
F051131	Metagenome / Metatranscriptome	144	N
F052593	Metagenome / Metatranscriptome	142	Y
F073556	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0069718_100031202	F051131	AGGA	MNRAFIYSYKTFVSFATYEDVTQRDSRVFEANEDLTESEINDYLELASQRILTQIRNTSWWREYQRKLAQIVDPNLLPAVNPDYILARTQEFKDLNVYFALFEYVYPSIADFGNPDSAEFAKIKFYKDSYNVLFDEVIEAGDWYDFSENGTIDTADKMAAVVNRVRVR*
Ga0069718_100031203	F049633	GAG	MRTELLTYLTANLTGDIKTSQELPWQEGTNPLYMKNARRVYLDEPNTEQDQFLPTLGTLSINARITTVRWYLSVDSKNRNADLDSAITTLGSAKDITTITGVWQRQFDYTTTIENDRVIYEGEYRFTNLA*
Ga0069718_100031204	F052593	AGGA	MAFIFPAPGVENVETTLAIRVSGDTSGLLIPAMQDITVNNSNDVFTWTQLDEESKLQIPTTATNSIDLNVVLDQVSFFGSGSGSDVAINKGIFGLSKDKLLVAFTLYLGDTSTGGAGKTLSGNAYITGLAPTVSADSPVWVSPVTLTVTGNYTVS*
Ga0069718_100031205	F073556	AGGAG	MIYDNKTDDEILRSLEAEVAKALSELRCAKKDLEQAEVRLRFALSTVHYLKQRFEGQ*