Scaffold Ga0062595_100047499

Overview

Basic Information

• Taxon OID: 3300004479
• Scaffold ID: Ga0062595_100047499
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1934
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.56
  • Long. (^o): -89.32
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000801	Metagenome / Metatranscriptome	886	Y
F001533	Metagenome / Metatranscriptome	676	Y
F033091	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0062595_1000474992	F001533	GGA	VVRDKIGRLREEIAAIQNLNEQFRRDGVNGAQVQVAHGKRMERLQAIQQGLVQLADLGRKVVSTDQMREKHRTRLHLVNKRAS*
Ga0062595_1000474995	F033091	GAGG	MMARLESTQRSKMEPITPSWKLTVADRRLMWLQKRHPDAEGRKLQLWASDSRK*
Ga0062595_1000474996	F000801	GGAGG	MTEKQWTVKDLLEALKRVPLDAKVYYEMGPNGPGTIGKAQYVRVWGDDEMGVLLDR*