NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068966_1280282

Scaffold Ga0068966_1280282


Overview

Basic Information
Taxon OID3300004476 Open in IMG/M
Scaffold IDGa0068966_1280282 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)834
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004502Metagenome / Metatranscriptome435Y
F026928Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0068966_12802821F004502N/AGDASKPGQQFRAAWQAAADAMSEWSRRMSEATHEALDKIEPAVRAAVEAGRSAVTGEWRNCQCRCYTAHPDDSGVCDGRAVMTRRVDAADVSLCAPCAVAQGVAEMTL*
Ga0068966_12802822F026928N/AMFGQLWVADAEGVAAGVADPLLAAVVPDVDDVVVDEVVDAGVDEWLVAALATAMLPPNPTPSAPAPTAVPIMILPSVDLNVSASSRSGDGPGHRTLTLAAGALQ*

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