NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068919_1001487

Scaffold Ga0068919_1001487


Overview

Basic Information
Taxon OID3300004473 Open in IMG/M
Scaffold IDGa0068919_1001487 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 4 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)777
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074509Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0068919_10014871F074509N/AITHSTAGCCVLRLPQRLTSSFRWRHILWLRRLENLRLAPTALQSGSTGGQLSRLGSAFHRSARPVANLRFASAVARFRSTGGDPSDLRRTILPPARPATNFRLAPGVDPSARLVSSLRLSPAAVATCQLALTAAATSSLRLLSPVCHTGGEPPTRIGCSSSSFTGFDSPDLRRMFLPPAGPLMHPLLQPNLASAAEPPMSIPYPPVRAPSGSASLTTSDLRRLLQCLARPAIPLRLSPQVSPSGWAGVDFPILIGFSF
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