NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068967_1103947

Scaffold Ga0068967_1103947


Overview

Basic Information
Taxon OID3300004470 Open in IMG/M
Scaffold IDGa0068967_1103947 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)725
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077901Metagenome / Metatranscriptome117Y
F084998Metagenome / Metatranscriptome111Y
F085937Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0068967_11039471F084998N/AVDSFNDLVEDAKERMSPEEFRKAEKEFDEIINKAKARASRGGRRETA*
Ga0068967_11039472F085937AGAAGGMAGRWKPPKSERTDAEALRRKRELAEKLAFEVEYGTEEEFVAAVKEFKPDVGKEELKEWIRRFHDARREKRGL*
Ga0068967_11039473F077901N/AFKRTGARVETPTLSITPDGRIAINAAAVRIARESRVKSVVLLWDATNHRLAIKIAQRGDANSYALSIAPSSHSGSLRAKSFLNHVGWKGHKREMIPATWNERERMFEAVLPLEHLESERWGVKRP*

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