Scaffold Ga0068967_1103947

Overview

Basic Information

• Taxon OID: 3300004470
• Scaffold ID: Ga0068967_1103947
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 725
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077901	Metagenome / Metatranscriptome	117	Y
F084998	Metagenome / Metatranscriptome	111	Y
F085937	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068967_11039471	F084998	N/A	VDSFNDLVEDAKERMSPEEFRKAEKEFDEIINKAKARASRGGRRETA*
Ga0068967_11039472	F085937	AGAAGG	MAGRWKPPKSERTDAEALRRKRELAEKLAFEVEYGTEEEFVAAVKEFKPDVGKEELKEWIRRFHDARREKRGL*
Ga0068967_11039473	F077901	N/A	FKRTGARVETPTLSITPDGRIAINAAAVRIARESRVKSVVLLWDATNHRLAIKIAQRGDANSYALSIAPSSHSGSLRAKSFLNHVGWKGHKREMIPATWNERERMFEAVLPLEHLESERWGVKRP*