Scaffold Ga0063356_100113863

Overview

Basic Information

• Taxon OID: 3300004463
• Scaffold ID: Ga0063356_100113863
• Source Dataset Name: Combined assembly of Arabidopsis thaliana microbial communities
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2979
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Walnut Creek, California
• Coordinates
  • Lat. (^o): 37.931388
  • Long. (^o): -122.021761

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006137	Metagenome / Metatranscriptome	380	Y
F022781	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063356_1001138631	F022781	AGGAG	MTAINRREFFSLLGGATAMSMAIPAIASSTDNAAAALTSLYVKGLVMVDLGDPDILRLGFPKAPGHSATLAVLPQNGAKRVMPIKGSGAVEAKPVTSADTKVLVPELIRMKEFYGDDVKSHIDKCPGVISIPRNTIHSIKATELTSARYTFVRTDSGEEVTTFRPRQVADAIKIELSSAGTLKLDGGKVNIPLESARELRVEYTAESVGSADPFADHFHHYFPYIERPAALDFDVVPKKVGAASAPAPHAGHHFMMIDAFILCSLVAVP*
Ga0063356_1001138633	F006137	GAGG	MSAPDLVRECGERLTDRELWRQFQERFQGLIFIYVMRSLRLRLIQEDVSGVVPDLAQEVYVKLVQHDGRVLRSFKGSSEFSVRAFLAKISASVVHDYQRRATTEKRSAQVIPIDYARAAESNRKNTADAPQVDFSQLGSILSLIDVERIVESDVDQKNARRNALIFQLHYINGLECAEIASFPVFGLTASGVQAILARLRKRMQA*