Scaffold Ga0063356_100050684

Overview

Basic Information

• Taxon OID: 3300004463
• Scaffold ID: Ga0063356_100050684
• Source Dataset Name: Combined assembly of Arabidopsis thaliana microbial communities
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4182
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Walnut Creek, California
• Coordinates
  • Lat. (^o): 37.931388
  • Long. (^o): -122.021761

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008664	Metagenome / Metatranscriptome	330	Y
F012952	Metagenome / Metatranscriptome	275	Y
F064908	Metagenome / Metatranscriptome	128	Y
F099653	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063356_1000506841	F064908	GAGG	VSEPPEIEYRGHFIAVRSESDGQRWRPKAVVSIYQRGTLRKQTVKAPDRVLLDSEEAAETYALAIAKKWIDEQ*
Ga0063356_1000506843	F099653	GGA	MTPVLQAVLGGMLLVGALSGCSVSPAQQDAIRQAWEERDAERAKECRRAGRGFVAGGCTGGGGP*
Ga0063356_1000506845	F012952	GGAGG	LIKTSTRLGPTRCVVVTICSLLAVATPASAQNAWTMWMMGASSPWDSVGTFPGRQQCMEALHQQALAVQKLGLKVSEDGTAGSFTGTDTDRDIRGQCLPDSVDPRVAKEK*
Ga0063356_1000506846	F008664	AGGAGG	MLGGFIVGAIAGGVMVWKYRDSLRDYLKDNAGPTRDRVDGLLRTVQQRSETLLDQAKEQLSSRLERTREKVRTGTGSGRPTG*