Scaffold Ga0063356_100035274

Overview

Basic Information

• Taxon OID: 3300004463
• Scaffold ID: Ga0063356_100035274
• Source Dataset Name: Combined assembly of Arabidopsis thaliana microbial communities
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4876
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Walnut Creek, California
• Coordinates
  • Lat. (^o): 37.931388
  • Long. (^o): -122.021761

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016064	Metagenome / Metatranscriptome	250	Y
F016418	Metagenome / Metatranscriptome	247	Y
F029574	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063356_1000352744	F016064	N/A	MIQLESSRETVEYRGYSLQVTFASPQWQVLIGMVVKDRPTLPPGQQLVKGWNEEETLKRAKTRIDLLIESPSLH*
Ga0063356_1000352745	F016418	GAGG	MSYRGYDLEQKTLMVGWQITITKDGKFVHNGSVTKTLTSAVDEAERYVDGAIAQADIAASAVSAPLEVSIGPVRT*
Ga0063356_1000352746	F029574	GGA	MLKGIEKMERSARYIVRLQKDGQYMVVMSRPEWANREIPGFATEAEANAWIAARRQQSRL