Scaffold Ga0063356_100027779

Overview

Basic Information

• Taxon OID: 3300004463
• Scaffold ID: Ga0063356_100027779
• Source Dataset Name: Combined assembly of Arabidopsis thaliana microbial communities
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5407
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Walnut Creek, California
• Coordinates
  • Lat. (^o): 37.931388
  • Long. (^o): -122.021761

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006703	Metagenome / Metatranscriptome	366	Y
F011678	Metagenome / Metatranscriptome	288	Y
F031558	Metagenome / Metatranscriptome	182	Y
F077471	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063356_1000277792	F006703	AGGAG	VTIADALTKATEGGYHINGLDNMATDYAGATSDGSAWTRTDNASTFMIAVEATFMDPHFWQALGQALGWDQTMMTMHTVENGRPTVVTRTGQHWLAQWHRFIDHLAEGKTPDAFFDTLTPSR*
Ga0063356_1000277796	F031558	AGGA	MRGGPLTLRQHHRMLPTVRWKEGGLMQYGNRVPDSVCGRCKKKIAMAVLTEVVYQDGLWFHTACHREGADQLLQATRLSDVLKEVQGVDSITSPLL*
Ga0063356_1000277798	F011678	AGGAG	MPWHKVVIIHDDQARWSAAALMRPFIMGYHEHGSTPPANAVVYYGVTETGDHIYYFSPEASAIAIATKAFQTFDVTQCPEPPPLDGLQKVTIS*
Ga0063356_1000277799	F077471	GAG	MQHPYSMESSIEVVRAIVDHIFLDYKSIHPYGVKKVHGSYEVWMTQKDHMITVQSLSREIILPCTDPDEATALKFQSFIERCIRQGMQGVTPDVS*