Scaffold Ga0066223_1280304

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1280304
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1544
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032990	Metagenome / Metatranscriptome	178	N
F068851	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_12803041	F068851	N/A	MANTDNKCKDLDVRDFFAENGYDQSKNSLEDLYSLQNETQSMYFKKQGRKPFSEYNIGDVIDFLMVTNHAIIDELHEMVDA
Ga0066223_12803043	F032990	N/A	ISRIIRFSSDNPRQHGIPYMYSLGALAEAKKLEIPDAEERLQWVRWKEQNHKSGLRDIGRQNGTFHQEHIVPVSQIAKKLYGLEEITVKNIHDILINNLKIAWILKTEQKTLDAVCRSGVRTPELLTTLDIHIKGFNI*