Scaffold Ga0066223_1222786

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1222786
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1427
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021755	Metagenome / Metatranscriptome	217	Y
F044492	Metagenome	154	Y
F056507	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_12227863	F021755	AGCAG	MKRTIIKLHNKKFADLVDHNVRECIQKKENYEIEYRGKSMILTPEELKTKCVGRQYIAEPKFGDKPYHLLSYLWEPTKTTEK*
Ga0066223_12227864	F044492	N/A	MSSEEQITVSINKQPSFTEIWHEGSVMYNETEYMFWLINPRGLDDQGREYEMEIRWWFKQVPMEIRKMSDQIIKDFKENRHDTRNSENRGSI*
Ga0066223_12227865	F056507	N/A	MIQGTAKTEAQYRAIYLDSSSSLKEFSTDRRKYHKKYILNEVVEDEDSKA