Scaffold Ga0066223_1177389

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066223_1177389

Scaffold Ga0066223_1177389

Overview

Basic Information
Taxon OID	3300004461 Open in IMG/M
Scaffold ID	Ga0066223_1177389 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	742
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034827	Metagenome / Metatranscriptome	173	Y
F048123	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_11773892	F048123	GAG	MEQVMKPRYDFSKGKLISYDGEIIEFGDATLVAKYADQVQEIMSLFDFKKGEYLVTDESIIGDFERENINPKKLQKFKKKYGFNLTNKSKISKIAERMYNFKPF*
Ga0066223_11773893	F034827	N/A	MKYTITSQDKEALTEFDKIKEGEVFSFFDPESVQRGNHSIYMKIRVPNTTSVNIIDLGDGKAYDFSNKKRNTINDPD

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