Scaffold Ga0066223_1162616

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1162616
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1513
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F009685	Metagenome / Metatranscriptome	314	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_11626161	F000852	AGGA	MTTKREYLKSQGITVGVRGRFSGAAKVAIQEAISKGVTFSDPQPVTNKAK*
Ga0066223_11626162	F009685	GAGG	MSDQYVDSVLAEAQRLLWGGSETENIEAHNLISKLIQDRMALKNLT*
Ga0066223_11626164	F001019	N/A	MSTYEPSLEILEMEYSCSPGGVDTFEVYDKTDMPLSIPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYGASR*
Ga0066223_11626165	F000263	AGG	MTPEENGLPSHLQRLVNYNVSGLDIMHGELKNLMLIAEQKLADAIEVEEESEEAMDSMDRTRCEGALDTLVDIYNLTYQLSFAIGVRSENLKDGH*