Scaffold Ga0066223_1157497

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1157497
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2443
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023955	Metagenome	208	Y
F036426	Metagenome / Metatranscriptome	170	Y
F064099	Metagenome / Metatranscriptome	129	N
F098062	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_11574973	F023955	AGGA	MKVIHNIMLLRDNGDIEYHDVEGEWNEEGSGGPAFEPLRKLIDCRMIEVAYGMDTMTKELTMFLDEEGLYNNTNVVNEIATNMQKKWCDANQRMQISPIVGDVAVDLGLNADSLTEVSTEMELQNNERKDNTTEA*
Ga0066223_11574975	F098062	AGGA	MSTQKEMYGQTKDSVIAQFKKVKPLYAGKSNLYIMGILSDAQMMIDAKQYKTANQFINKAKLLLSTKCK*
Ga0066223_11574976	F036426	AGGA	MKTITILIAMLFSTIAFANDYAPERNDRINLYKVTSDNENAPMYSGYYKDSDGVVHQVAVWAGSSDKYLEGPVTLLESN*
Ga0066223_11574977	F064099	N/A	MSNVYRLIIIILLVYIIWVDHRYVQVGWCESEIDVLRNTVAEIHTILKQ*