Scaffold Ga0066223_1143448

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1143448
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 881
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium TMED228 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048362	Metagenome / Metatranscriptome	148	N
F104042	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_11434482	F048362	AGGA	MLNKLQDWLMNVAAKWIWFAIMLPIRITLGLCFAVAKYMPKTVHLPYKVVKVEREQSSNNQTWWK*
Ga0066223_11434483	F104042	AGGAG	MKELIQLKKMLTDAHKEIRSNKKKTLPAFGVEMYLLNCIIQCNVVLNKTNERKKYAK*