Scaffold Ga0066223_1112988

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1112988
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3982
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y
F016811	Metagenome / Metatranscriptome	244	Y
F024348	Metagenome / Metatranscriptome	206	Y
F056899	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_11129881	F008384	AGTAG	MPRYDKSLIEREAILSVKQGSLTNNLGIFILQRCKEIAASAFVTDGNNELKQALIDAAVMRTCEKFLHYYTEGKSAANLVISIIYSTMTNKIVSLNHSDVYGHNIKGYLTYIEDGEAVTKLMRYIKDDYLSEKL*
Ga0066223_11129882	F024348	N/A	MLIEEKYEDLTDAEANLILDLYRVIDELVYFGQPVTLVRFGFELGINTQELSDYLPIIITILNKVEEQYAEVRQVAD*
Ga0066223_11129883	F013231	N/A	MINQRNYQTCKLVKNRVDLYLYEMSILFANLGTDSTPEEVHNAYKKEGEYIELIAELDPDKARRLRSS*
Ga0066223_11129885	F056899	N/A	MSRNTFVRASISGDYGQDLVMKYLEDKGYEVEEAPKKLFYDWDVKGVKNGRTVTIEVKYDSKAYMWAARRGTPEQPNLYIEFRSTTKDADSGILKSKADFYFYILKTGDKDIAFVFDRVQFLQHLQMSNYKVVGNGATGDNNAQGWIPPLHELLVSRYGYKATIDLTEYA*
Ga0066223_11129889	F016811	N/A	MSNEGQMIYDVGVRLAWKKKRGNGYVNMYQGTKDRPFQFVTRAKSLDHINRNPEMIAKMMSFVGATGKAVYDFHIIEEFYRKEISNSFSHKEEDYEKEFGQ*