Scaffold Ga0066223_1099253

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1099253
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2954
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006893	Metagenome	362	Y
F019968	Metagenome / Metatranscriptome	226	Y
F022646	Metagenome	213	N
F031868	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_109925310	F022646	GAG	VQIRKANIIHSVKHQKFVASFPCVVCGNNTQVQCCHIRSIPKIGNVGKGIRDDKYCIPMCFTCHSLQHQIGELEFFYRYNINPILISMKLSIISPCSKLNQLKQEGAYNGSLNYKEHIRNNKKSSLQS*
Ga0066223_109925311	F006893	AGCAGG	MEVLTIKNISEITKKVLCNPNLYKDINFFEVPHNKVCLAVIRELTEFSYNDIGKAYGKSWFTIYSAVKDTQKNGLKSFT
Ga0066223_10992533	F031868	GGAG	MKTVQQEIDRLFLESKKQPHIVETYFEYYYTLLDHSDLTLDEFYKLYPQYDVEKTDSLYWKQFMQKWKETCREQK*
Ga0066223_10992537	F019968	GGA	MKKDIGVICSMSYYEMKLVINSLSRTLLENEIKNEYTARIHSLIEKLNNMLTKQGHVGTN