Scaffold Ga0066223_1077707

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1077707
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1116
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013295	Metagenome	272	N
F054415	Metagenome / Metatranscriptome	140	N
F093726	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_10777071	F013295	N/A	FARREIIKYLRDLFDNPQKYITNFESYTHKQQEEILRFISLDEDRINKLLNKPMEEK*
Ga0066223_10777074	F054415	N/A	MGETMTQHNSKVEQQRERLKTEALDNKVTTLEIRAGRIQTWYESGRVVTEYPRDKRKKTTTDYRGIK*
Ga0066223_10777076	F093726	GGAG	MTYEIAEYKYATHMKSVYGLKGDIEYPSRKHSQQDSEGNWLLISFNGHKMG