Scaffold Ga0066223

Basic Information
Taxon OID	3300004461 Open in IMG/M
Scaffold ID	Ga0066223_1060824 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004461 Open in IMG/M

Scaffold ID

Ga0066223_1060824 Open in IMG/M

Source Dataset Name

Marine viral communities from Newfoundland, Canada BC-2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4376
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4376

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Newfoundland, Canada

Coordinates

Lat. (^o)

47.593411

Long. (^o)

-52.885466

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010746	Metagenome / Metatranscriptome	299	Y
F010897	Metagenome / Metatranscriptome	297	Y
F016115	Metagenome / Metatranscriptome	249	Y
F020860	Metagenome / Metatranscriptome	221	N
F035200	Metagenome / Metatranscriptome	172	Y
F035215	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_106082410	F035200	GGAGG	MNLKYIVLRDGVRVSEDMHTKIEDAEHEAEFWRKVIRSWPDGTKVTIKKIGG*
Ga0066223_10608242	F035215	AGGAGG	MKSSEQIVKEINDRIVEYKTLQFEHDNNQDAVNLLESAIHELEHLLEWINE*
Ga0066223_10608244	F010897	N/A	MKLINTTSYCSEKLKEIIKWCMPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRIHIGVPRYGKYLRPYNTGGRKGYLSVETYSWEEGLIELIAHELRHLYQWKKGKYYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKSNFKLNLV*
Ga0066223_10608247	F020860	AGTAG	MEITKAKKLKEGGYALYAVDPKTKTETQVGYIGEELPLEGYLPKGLKIENS*
Ga0066223_10608248	F016115	AGGA	MVGRDGDVAIYKKQLDEPDSEAYNYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGFTCCNREDADKRFIQLKEKLSAYVATATLPNGEKRGRGRPRKIDLTKTELVVS*
Ga0066223_10608249	F010746	N/A	MIYKCAVSGEAIPPERVEALQVLGVPETLWTKKEFSQTRKLRAVYAGDDGSNDIVICDAVDGGSMFDNAVALEVENES*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066223_1060824

Overview

Ecosystem & Geography

Associated Families

Sequences