NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066223_1059110

Scaffold Ga0066223_1059110


Overview

Basic Information
Taxon OID3300004461 Open in IMG/M
Scaffold IDGa0066223_1059110 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1653
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020600Metagenome223N
F036433Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0066223_10591101F036433AGGMVKKKKKAKPLNEARSRADHGTPEALKQADGVQFETVDGGRLGSVKRAYISRQTPMDRYKARGLVTQRQYDAAHAFFVLYDKTRQAGRVTSNYDRIIVDGGSGGGINEYAFSDYIALSQKLGIDYVSVVRAVVVECESAAGWAKRYRLPSRMGIEKLRDGLDKLAKIMGVS*
Ga0066223_10591103F020600AGGAMTNNTDLILPRTKQRLPADVLLPGQEADVGTMMLEYEREQAKRVRRQVLPCDRTYVRRQVDDTAIILLNEMRKAGPCTAKYLAERMSISTHKSANLIKSLTSANLAEKICLTVRGHVQKGSSKYRTGARERNDCWVYQAVAQ*
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