Scaffold Ga0066223_1035364

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1035364
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8591
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025460	Metagenome	201	N
F030376	Metagenome / Metatranscriptome	185	N
F041643	Metagenome / Metatranscriptome	159	N
F045601	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_10353641	F041643	N/A	SEDGENVFVDLTISSKGGKSLRCLLLLLWQRFGPRKRITFNRSGKPRSYDYMTFMRKARV
Ga0066223_10353644	F025460	AGGAG	MAVLDVPELMNMFRQGNIDKQAAAEAQRKQALEERAMALKEQPDVDFSFEKGGLKVKGKLKDLPALSQDPAFAPYLAGIGSTISNEQDLQNQDIETQRAELSDRLKELQKKRVKQEIEIAKGDRRTFAMEAGLGLVGAKPRADVLKDIEAEAGVYRNKLAELGFNRQAGQMETNVPDYQSSTMPLQAPTKVAPETPAQAPAQQEAPKNFNSLQEAKAAGVKPGQLIYINGKPGRLQARQ*
Ga0066223_10353647	F030376	N/A	MASGMAEGDDGDAADFVGAVLKRNGFSCGRGCVISENGGMAYSSSSGRSIISTEGFYYKSGSSVVGKDSTFISKSRNFFYGTSATIKAGSAYMNGDAVWVGSQEEDND*
Ga0066223_10353649	F045601	N/A	MNDKXXXXXXXXXXXXXXXXEQGWQKARRTAQYAGNPEGGSGDVVCENFPFHIEGKRCQALKPEEWMEQSKRDCPAGKIPAVFFRRNGRKEWLVILTADSVCELARQIAPANVTIEYAKTATIAQGFYVKSPAFDELTPTTTNPNK*