Scaffold Ga0066223_1033407

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1033407
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2013
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → unclassified Vibrio → Vibrio sp. HI00D65 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058517	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_10334073	F058517	GGAG	VAELERPTIQLADASGPQPLSDESNYKFLQQIFDAKEKDPLAKKGYDVDSVFQILEGKKGYRTYGVYDSDIAEQPDTNLNREERNYLYKTDYEDLDRLNPKMSKANKGVIMMEPFNTEQGVLTLIHEFRHKAIDDNPVLEKIVKDSGFSEEYIVRAMDLKYFDDERTKEFMESEYDFKLTNYGQEKLNKTINKLEEASLPKKEEKEDPSFFSKLKEKLGFNQGGIADINYLTRRL*