Scaffold Ga0066223_1023317

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1023317
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1359
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030251	Metagenome	186	N
F077805	Metagenome	117	N
F092744	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_10233171	F092744	AGGAGG	MATITTLETFTAKNHPTISGELSKLTNRKGENLYLVSFLDMMHNQEVTLGRYHSLTSAKEGFDLHKKAAQWGELYA*
Ga0066223_10233173	F030251	GGGGG	MLSTDSFPPVRMATFPAQQREISMVKRTPFIGTPLWLIFERDGEPEPQEIARFRDFYLALECFDSLVEEAKNEG*
Ga0066223_10233174	F077805	AGGA	MFKVSYSIRVRQNIVPCEITFGTRKMAETFAGITYGSKIERVYTDGELFDLWSQGQIDTGAW*