Scaffold Ga0066223_1004912

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1004912
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4509
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016167	Metagenome / Metatranscriptome	249	Y
F054356	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_10049123	F054356	AGGA	MSFNLNNFVNFMDQVKDKDWVDDHVIIDGVSPEFQKQIKDKIRERLKDDTPERSKTKRLEVQEL*
Ga0066223_10049125	F016167	AGG	MAKMSERQREYFLSRVNDEIYNHKRSLELKESSAKEKMVKKLYPKYVEQVGLKKELAELQTLETKYNRLLNHMNNTITRMFEAEELYMHDGNESYARVVSNLTKLANKTLDREFVKSPEGKAMLQLDQAHQRAKDIIWSAGSDSNIMQVVGNVLSKDAGISLDFNPLQIESK*