Scaffold Ga0066223_1001005

Overview

Basic Information

• Taxon OID: 3300004461
• Scaffold ID: Ga0066223_1001005
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61990
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (15.87%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004370	Metagenome / Metatranscriptome	441	Y
F028860	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066223_100100523	F004370	AGGA	LWNGQKINIDILLENLLKIMYKVRKINFGWYKRRYGILLENLPPLKQKLLLNNRHMKWLESDTQAFEVIFKVEDMNGHEKNVNKAIWNPFRETFTTLKELEKDADLIDWNCGICKVPIKSRMDSKKVENFVCSKCSKAHNSRNRSVDGRIIDTSIRFTKHCKHLLKKEQREFMSYAKRSSKT*
Ga0066223_10010056	F028860	N/A	LHLQPTELDLLPFYEYEFTLEIYNDLLKERNKQEQQNTKDTQDKYNMDGLKSQANKNMSQYKAPKMPSIKMPRL*