Scaffold Ga0066222_1311387

Overview

Basic Information

• Taxon OID: 3300004460
• Scaffold ID: Ga0066222_1311387
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 949
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F021434	Metagenome / Metatranscriptome	219	Y
F063773	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066222_13113871	F063773	AGGTGG	MAQEFTINSEAIESKINSLLPSQGGFGAGIDFSASTMIIPTIDLTETASGSSLR
Ga0066222_13113872	F000613	AGGAG	MPLVKKRLSIAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFNVNNAEFSKNASVSALVTGEPFGWNGNYAMNDMVTTGQVRNRPVITFTNGTAATRTVDVAVFIGG*
Ga0066222_13113873	F021434	N/A	GGFGNLAGQAARFLRTPGGQIGTGLLGGIGASMLSGNGGGMRITRKMKSQYRAVLNLAQGDYDQAAAMIGVSTDMFIMVLLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPSATRRKAPMRRAATTLISNK*