Scaffold Ga0066222_1124637

Overview

Basic Information

• Taxon OID: 3300004460
• Scaffold ID: Ga0066222_1124637
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 799
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030251	Metagenome	186	N
F046022	Metagenome	152	N
F077805	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066222_11246371	F046022	GAGG	MKVNRQILTARALQDIQTKTAAQRAVDPVDKTAKNLIWKQIFDAQLKGESDA*
Ga0066222_11246372	F030251	GGGGG	MLSTDSFPPVKMVTFPALQREISLVKRTPFIGTPLWLIFERDGEPEPQEIARFRDFYLANDCFDTLVEEAKNEG*
Ga0066222_11246373	F077805	AGGAG	MFKVSYSIRVRQTQVPCEVTFATRKMAETFSGITYGSKIERVYTDGELFDLWSQGQIDVGAW*