Scaffold Ga0066222_1088597

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066222_1088597

Scaffold Ga0066222_1088597

Overview

Basic Information
Taxon OID	3300004460 Open in IMG/M
Scaffold ID	Ga0066222_1088597 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3192
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010201	Metagenome / Metatranscriptome	307	Y
F051968	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066222_10885973	F010201	GAG	MIYKNIGAAIKAAKEMCVALDTYVKITECKDGYELFGTGKLIMEIKE*
Ga0066222_10885979	F051968	GAG	MNIEKVTNMMCEFVAYVDDFYNEKSGIYPIKGMTDMMVIKAVQKHVANVGMDFCADSVDREWVRDIILADNDVIWSAN*

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