Scaffold Ga0066222_1029534

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066222_1029534

Scaffold Ga0066222_1029534

Overview

Basic Information
Taxon OID	3300004460 Open in IMG/M
Scaffold ID	Ga0066222_1029534 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	10665
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (35.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F088883	Metagenome	109	N
F095468	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066222_10295343	F095468	N/A	MELEKEIFPGKTLAQLVEEVYNKHKSQDSTIKSEILRLADMIEGPGDAIVLVPMIKGLLDSSLKNDEVLMKILSEFQKSAEAKDKSVEDGGVLTEKDIEQLMSDVTSISQKQIAKA*
Ga0066222_10295345	F088883	N/A	MITSTIAIILWAATILGAIVYNLYRKNKRLEEIVINQSGFVNDTLSLLDDFNGLVNKIDMTMWVQSDPELLQLFENIKAIQLRVQQFTGRK*

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