Scaffold Ga0066222_1018335

Overview

Basic Information

• Taxon OID: 3300004460
• Scaffold ID: Ga0066222_1018335
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18520
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (69.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042220	Metagenome	158	Y
F046257	Metagenome / Metatranscriptome	151	Y
F079822	Metagenome	115	N
F095174	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066222_101833510	F046257	AGGA	MLKKKIDYDWQAIIDGNRIGITNVIRGIRNGEVDELELEKLNNFVQFSLALMQLSGPDKWARAKMNAEMMNYIKSIDS*
Ga0066222_101833516	F095174	N/A	MWCNNASTLHFGLLTMTDEKNILYKKDYVTAAKTDIRKTFAKFRKEQKSATKISTLEKTQPINIIQYKKFK*
Ga0066222_101833542	F079822	GAGG	VKKSDWALNLLRDDYFIEMMEELRGMELAKFLNSDYNDIEVREQSYLRLRVLESIDNHIQGLADQKLIDEKKLKIL*
Ga0066222_10183359	F042220	AGGAG	MSDFIQKQIDASERLFNVMLEDHKQRFDKIAAVYSLSESLQKKLNERDLEIARLRQQLRIYESIDFM*