Scaffold Ga0066222_1002460

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066222_1002460

Scaffold Ga0066222_1002460

Overview

Basic Information
Taxon OID	3300004460 Open in IMG/M
Scaffold ID	Ga0066222_1002460 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4530
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042077	Metagenome	159	Y
F086303	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066222_10024601	F042077	N/A	MEQSYCLISSFDLERIDEMLVRAINICGSPRPFSQTTEEDDCTASYAGAYGYSYQTLKSIKEYI
Ga0066222_100246011	F086303	N/A	MKSLISALVLTAASVLPVSASLHDFNTINAAPVTTRTKARVGEGQCINTRDGSQFCYLKTSSYNFSIAIRDVDYPNATEVAHIDCSTGRWGAFGELPKATLNLYLDSFCPTFG*

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