Scaffold Ga0065201_1638795

Overview

Basic Information

• Taxon OID: 3300004459
• Scaffold ID: Ga0065201_1638795
• Source Dataset Name: Marine microbial communities from Galveston Bay (MSEDA12C- fraction 11)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Shell Corporation
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2238
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location

• Location Name: Galveston Bay, USA
• Coordinates
  • Lat. (^o): 29.5
  • Long. (^o): -94.76

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000713	Metagenome / Metatranscriptome	925	Y
F097383	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065201_16387952	F097383	N/A	MSIIFAFYVSMACNLAVFGMFLYVIARVAKFNRSLKGLDWQAVADITGDIGAVKRSIQRLNNRLNGLEKTASTPDALAELALMHQQQQNVTQLQQPQRATGG*
Ga0065201_16387954	F000713	AGGA	MPLVKKNITVAAGATSDQILVGTPYEYVGPNTRLVVAAAESTGTYSGNVTMDFKVNNTEFSNDVAVSEKVSGEAFGWNNTGYVLNDMITTGAERNRPVITFTNGDAASVDIEVAIFIGG*