Scaffold Ga0065201_1633245

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065201_1633245

Scaffold Ga0065201_1633245

Overview

Basic Information
Taxon OID	3300004459 Open in IMG/M
Scaffold ID	Ga0065201_1633245 Open in IMG/M
Source Dataset Name	Marine microbial communities from Galveston Bay (MSEDA12C- fraction 11)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Shell Corporation
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1227
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location Name	Galveston Bay, USA
Coordinates	Lat. (^o)	29.5	Long. (^o)	-94.76	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006008	Metagenome / Metatranscriptome	384	Y
F097383	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065201_16332451	F006008	AGGA	MPLVKKNISVAAGATSDQILVGTPYEYVGPNTRLVVAAAESTG
Ga0065201_16332453	F097383	AGG	MDIYTAFWVSFACNWAVFGMSLYAWARVARFEKSLKGMDWQAVADITGDIGAVKRSIQRLNNRLNGLEKTSSTPDALAELALLHQQQQANVTPIQQNRVTGG*

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