Scaffold Ga0066224_1136244

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1136244
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1005
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003834	Metagenome / Metatranscriptome	466	N
F050676	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_11362442	F050676	AGGAGG	MQTKLPVKSRVADKYKPMLTYYAELIGLCHETVAETQSLKLLDPMGKKTTATSLFIRVCQRMDKSIDAKEIADKLENVSKINQQKEIA*
Ga0066224_11362443	F003834	AGGAG	MSSTKTPIRQAEMDHIDHFLETKYDDRKNTLKTEMQDIIDREAEENFEAFKNKLNVNKLHKEVYAFYKDHEKFANEMDTILLEKKGKLDNAINTLEDKLEQWKKVRKWENEISRSLLKQPDELDRLLKKLCHEETTRDFYKGPRGKSLQMLDMSKEYCKNLLNAGQSLATVWKTIDIEMSKEKINTSTIPK