Scaffold Ga0066224_1132962

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066224_1132962

Scaffold Ga0066224_1132962

Overview

Basic Information
Taxon OID	3300004457 Open in IMG/M
Scaffold ID	Ga0066224_1132962 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada MC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1649
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, CA
Coordinates	Lat. (^o)	47.65117	Long. (^o)	-52.695961	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040179	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_11329623	F040179	GAGG	MASFAEEKRLRAHMELIAEAGDYAAYFSQGTNSDGDPSAWFITNDSDITAAEVLLDAKIAELSDIGTETANGTGPSNFEGYTPIHYDDSVSGVDYRAWFVNADGDYFKADNGNSDTLEQITDADEQATLISDSEYVVE*

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