Scaffold Ga0066224_1109350

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1109350
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1218
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038423	Metagenome	166	Y
F040181	Metagenome	162	N
F076503	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_11093501	F038423	GAG	MTEHDNFIFNLERKQARIKAAIKAYKMQYLSDTATSLPKRKKPDSGSTLKTKLLGTK*
Ga0066224_11093502	F040181	AGGAG	MGFDWMGNDGDIYRSLKGIANKGGYFGSVNQANFWMRCAQESGVHAGPCFSWGDSVELEPGEFMFFCEGSISANYATQAGVQRGWGRKTRYKTWGFVVDAAGVSLIYQLYRSYSDKDGGSGPNAARTEVIWRRVNEAVEAPIAGFEAIRAEREAKIAEAKAQSKYVGEIGERIDIEGVARLVSSRDGRWGTTNLYIIKTSDGNTLKYSGTNHYGEKVKIRGRFTVKQHTEYNGTLQTVINRPHKVESEILDDGA*
Ga0066224_11093503	F076503	AGGA	MMTIETYGELCDNSNFEVVCEDEENDAVWINGNPNSEDFTFKNWDEVKIELSKHFEDIVEISAV*