Scaffold Ga0066224_1098277

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1098277
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1887
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025385	Metagenome	202	Y
F035970	Metagenome / Metatranscriptome	171	Y
F090864	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_10982771	F035970	GAGG	MDKWNIIMKTAKELAQEYRKEGWRGDCNDFTQASSSVSQELTNREMEALWDEFSNQELLTDGMIFTFTRQGRDKIISVKKCPPK*
Ga0066224_10982772	F090864	GGAG	MRLIAHNKSGTGYALQETDGRWIVRFHHNYNKYFVFTKNAFKHGYLKGCGIVNLEDNNG*
Ga0066224_10982773	F025385	AGGAG	MSFKTNDNTVIETFMQQKTAKSGKMRTDGQSLWSFDTRIAEHISDGDGQGATIVYDYTYGGGHYISPTTSNHVRLTKKQVPRPNWMNVGEAQEHGLCPLVESRYDASNRS*