Scaffold Ga0066224_1058251

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1058251
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3603
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029404	Metagenome	188	N
F040869	Metagenome	161	N
F048634	Metagenome	148	N
F066135	Metagenome	127	N
F101914	Metagenome	102	Y
F105877	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_105825113	F101914	AGGAGG	MANNWTCSNCGCVHWDELVPISCIMCDNGTFHDSPDKFYQKETNYIKDKKDD*
Ga0066224_10582513	F105877	GGAGG	MSNHENEMLKENIFDLWVEYLELDGWPKGCNETYAEAARRTESEWLEMS*
Ga0066224_10582514	F066135	GGAG	MNGLRIHNVNNIKVKRDDFQSFTTITVTVTDEANKDFELTLFTDKGFTPNMEVQNEDS*
Ga0066224_10582515	F029404	GGAGG	MKTVDFVEVELGGDNWKITWDVNLRKKIKTTGEKSGLKYTIYSLTDLTPAQAYDIAMVQLEWLKKEQSYVI*
Ga0066224_10582517	F040869	AGGAG	MNMKVFKQVYNELSLLQEEDTDDLNIAEESLMAAMTFTMTNAPSVLNGLCLISNTFNGILAEYTLKDIQFRGE*
Ga0066224_10582519	F048634	GGA	MTPLEAIEETLEVLSQLQLNGSVKLEDSDKMSQCIQQLHSIRFNLKMKDNQNV*