Scaffold Ga0066224_1046818

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066224_1046818

Scaffold Ga0066224_1046818

Overview

Basic Information
Taxon OID	3300004457 Open in IMG/M
Scaffold ID	Ga0066224_1046818 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada MC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7452
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (38.46%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, CA
Coordinates	Lat. (^o)	47.65117	Long. (^o)	-52.695961	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083373	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_104681813	F083373	N/A	MSTHPFDTHNFASTKLKNVPSYLQAEAEDYNLKVAAYFDNYGNISDSIDAAIAEQDRVWKLRTEEGWHADEGGWYTPNDIHETDWEHDYGNPFPEQPVWRDYVAMCRKNAGWRLFDAGWYMPTGEHELSCKLENLPEYDV*

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