Scaffold Ga0066224_1032879

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1032879
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2468
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015219	Metagenome	256	Y
F039678	Metagenome	163	Y
F042013	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_10328791	F015219	N/A	MTVKPESKLGRLLMKNINAQWTRIENRHGGGIPDLYGIRHGVAVWVELKCIKQNSINLSPLQISWNYNNFRNGGKNYYIVQDARSKVLKLYDGDKGRELKEKGWDCTLDLLYTEFPYDWERLGNYLFS*
Ga0066224_10328795	F039678	GGAGG	MTEELYWHRVSNLWIIYHSITDDLVYKAMWKRKLTELMRKREENDKR*
Ga0066224_10328796	F042013	GGA	MTKDNFIMPDYYNTSKPKIEEELVKRKCFRCNKESKMGKFERYCSPTCRYHATKNYTSGYKVGY*