Scaffold Ga0066224_1031883

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1031883
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15364
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005010	Metagenome	415	Y
F006866	Metagenome / Metatranscriptome	363	N
F010834	Metagenome / Metatranscriptome	298	Y
F031655	Metagenome / Metatranscriptome	182	Y
F039095	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_103188313	F010834	N/A	MKKDLNLSLTLPKTISLNALYAGKHWTFRKRIKDEYKKIVEEELARYDHHIAESMSIHIRYNTRADVDNLVLVSKFTADTLVANGWIADDNPKHYHKLTITFDQSVEKNYCEVEVRLKGATLRV*
Ga0066224_103188316	F039095	N/A	MDELKEEDYSWVRGGSKSIALLWLRQKNQDLMQIANALKPQDTSNEYEMDIFIDLISIYSAIDASIGMVEDVQQMVWEAEAKNADLKLTIRNLTRKINAYEERFDNLNEHLK*
Ga0066224_103188318	F031655	N/A	MNFAIDIAPLAGLLVGANYWNSEMNDDFENPKYHSLQLCFGVFALVITWATEREE*
Ga0066224_103188328	F005010	N/A	MKTILRKRKHIRELQKFLEMLMIDNVNLSIQASRFGWTTELQDTITNNALLIRKYQRRLRLIKL*
Ga0066224_103188329	F006866	N/A	MEEQGKSATVLINRNNLNNLFELLVQVHLRGQLSRDEQAFLKNFIELPDAPPRENRQARRANTQAIKKLFREEAKRKKDEWVNIINYNHL*