Scaffold Ga0066224_1026169

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1026169
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3389
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020790	Metagenome / Metatranscriptome	222	Y
F040861	Metagenome / Metatranscriptome	161	N
F056151	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_10261691	F040861	N/A	MLEKLKPLRSTPTGIYFRMADGRIGYANHQYARVSVTREGIIDGKYYKNDCEIGDRMYQINKKINYPHNEIPSINMVGRVRYNDISEAISALQLFNCKNCGEGAIEYRKNKILKEYKEHKALNIRSVLTRQDIEDEGGKICDAYNRGHDDGKENGYNDGFRDGVASIEDKLNKLL
Ga0066224_10261692	F020790	N/A	MTSKMMSEKLLLIADFEQKYGKDHGISNVNAMKKYCSDIEYRQRVHAFNKASAETIKHYKLFTC*
Ga0066224_10261699	F056151	N/A	MQKLKTNHYKSQILNTKKLKINNKVYIGFNINNLQDIKIIDKLNICDVVEFNIKGMSYINKNNIKKSTLQFI*