Scaffold Ga0066224_1020002

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1020002
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2604
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016292	Metagenome	248	Y
F030882	Metagenome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_10200022	F016292	AGAAG	MEKRIRKIGDCYTKFGLKHSSKSQNTIPDDIRFRNYIVMSPKEKMNMPKNCSFEGGTLEHELVQIHYTQNKTLEEALKLETVQDRINNYSPVDEKDKIKFNHIVERLIPVAQNHLDNVNELPKQKWKAELEYTHWDDRIQTYFLSYVDLIGETHFGDIKNVFGTLVKTKAGYSYTKKKCPLVPFHSDCLQIALYQKLLPKLKPFLTYASDSDRKIFTPENCTELRPESLEHYYDELVLYQRCWEKKLELADGNIETLALLCKPDFSEIRKNGFWWKGTDPDVVKRFRGYYGF*
Ga0066224_10200023	F030882	GAGG	MDFKGLVDHYQTLPKSELIEKLVFKNARLLNQDNVIEKLEDEVKRIEEIDLGHQKLNGELSEKISQLEKQKIILQKAIRKNGENNE*