Scaffold Ga0066224_1014511

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1014511
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2426
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066804	Metagenome / Metatranscriptome	126	N
F086161	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_10145114	F066804	N/A	MLISYLEFKLNKEIAYEDTFEKDKEIRKEYDEYVKQTIKKEEKMLDKPIYFNVYKVESENPKAPTFSWNGFTVKEDIVIKAGTKIDMTFWGNSTNQNDGKPNPHLKISNHVPREDKGGVSNRDINYPTKEQVAKQDNNYLDDDSNF*
Ga0066224_10145117	F086161	AGGAG	MNEHKTFVLNTEDTFNKLQEASEKKAETLFRYRKLEKSEKIVLAKLKNELRLNHDKISQTELTDEAYRQTKYKEWLIAYTQAEKDFTRDRDRYNNLIALKDMRITEESSARYLINKK*