Scaffold Ga0066224_1001879

Overview

Basic Information

• Taxon OID: 3300004457
• Scaffold ID: Ga0066224_1001879
• Source Dataset Name: Marine viral communities from Newfoundland, Canada MC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3147
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, CA
• Coordinates
  • Lat. (^o): 47.65117
  • Long. (^o): -52.695961

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005454	Metagenome / Metatranscriptome	400	Y
F022015	Metagenome / Metatranscriptome	216	Y
F023593	Metagenome / Metatranscriptome	209	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_10018791	F022015	N/A	MYYQSKSNITWKQAFAEVNASVLKHEIICAIASEVAGKSVENLIGFTNEQRDLVWNDYYNTTELCG*
Ga0066224_10018792	F005454	N/A	MRIIKHFNPHFPERETYKCTIRYTTKFGSLDEVNQWRDDQLKNEDYYKSLEESNTKAAGEFYETLTYKGD*
Ga0066224_10018798	F023593	GAG	MNEIDEIAQYQADVILETLKEQVEWAIADYDLNGDDYYNLRDYTVYQTVIKLLEQVDLVDVDYYKQNTIISG*