Scaffold Ga0065861_1169379

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065861_1169379

Scaffold Ga0065861_1169379

Overview

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1169379 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	896
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007945	Metagenome	342	Y
F070312	Metagenome	123	Y
F094402	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_11693791	F094402	GGAG	MGRDFTDDIDDCCEAILGHRNWGFADSKLHKTVETTMSKRNGDSPKSDRIEHVIIFYKESQQEENE*
Ga0065861_11693793	F007945	AGGAG	MMSIIKGHTSIFALIGDAYSKRDIQRFYYSYGLCVRAKTNMKILHKYLINRHDFTRQDCANLLRSGRTVR*
Ga0065861_11693794	F070312	N/A	EIEFTDKSIGCPRKYKCVYNPNSKEPNINDVMKSLKDAVK*

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