Scaffold Ga0065861_1101948

Overview

Basic Information

• Taxon OID: 3300004448
• Scaffold ID: Ga0065861_1101948
• Source Dataset Name: Marine viral communities from Newfoundland, Canada BC-1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Yale University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2990
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location

• Location Name: Newfoundland, Canada
• Coordinates
  • Lat. (^o): 47.593411
  • Long. (^o): -52.885466

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026210	Metagenome / Metatranscriptome	198	Y
F066486	Metagenome / Metatranscriptome	126	Y
F071966	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_11019484	F071966	AGGAG	MLSLLGSQMNFKGYIFKPFYLILGVLYFMVLLSLLATLYIILYIRNTLEITLKQIEKNRNKYKRMK*
Ga0065861_11019486	F026210	GGAG	MSPILGANPLDYDAKYPQSVDTSVNEDAKMFVMERNEGKEVMFQIEDGTQFYGKISSVPNSEHYCVIVDRNGTPWEWYVREEAVRFVQDISIKI*
Ga0065861_11019488	F066486	N/A	MKNKTLSKNDPYYLKVGKFKKKAVYDAKVDMSDQMENTFESLGREHITKEQYINIGFNYALIKGLGEVKSKKK*