NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1093853

Scaffold Ga0065861_1093853


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1093853 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4352
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007770Metagenome345Y
F016956Metagenome / Metatranscriptome243Y
F023615Metagenome / Metatranscriptome209Y
F039679Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0065861_109385310F023615N/AMNRFELEDSMSNLHQIGEDIETIIYAIGDSPIKHTEDQLLNMLIGMKQLHDTRYQKMWDTFEQLIHNGTISDKNTEGL*
Ga0065861_10938535F039679N/AMSVKDSHLTIREDLVEEGLSVPVWFLDYKEDTHVEDTPTLNIDCDYSTNGEELNPWGANVIVKITDPNQVDKYGEPWKDRLAFAISADFDWN*
Ga0065861_10938538F007770N/AMSGEGLTTSFKRTTQTTKSNKQLLREFQKIIYSSRVMKHMKWYGQAESVQLIEHGDEELPKFQQEYVAIKDTFEFYISVRESWYEDADLYESHEVEDSFVSLARKFVNGNALMYFSEGFPAEWIEQEIIDGEKHWNHFNVKPDDKKIDKICDVWYRYGMMKLQNDSKELWYNARDQIKQLMEDKNECEYTR*
Ga0065861_10938539F016956AGCAGMEQYRIKIQKDYKMIDTYEVWQAPKKVQLAIIDLAITHIKKVISNPEVKTEGDNFDYWNSYDLGDGNYVDYNIYCGDDWCVLKQDGSGEYEFTDPSKWSWGVACYAVDPPTKENKYHQIDTGREQYLFSYNKSYGNFEVEFENE*
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Institute for Fundamental Biomedical Research
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